Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2081

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10448 and 10449 overlap by 7 nucleotides10449 and 10450 are separated by 333 nucleotides mRNA_2080: 10448 - Hypothetical Protein, at 25,123 to 25,584 10448 mRNA_2081: 10449 - BLAST 163.m06341p [Cryptococcus neoformans], at 25,578 to 27,560 10449 mRNA_2082: 10450 - Hypothetical Protein, at 27,894 to 29,242 10450

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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24,942 + +0.9
25,076 - +0.9
25,083 + +2.2
25,084 + -1.1
25,114 + -0.5
25,119 - +0.4
25,120 - +1.2
25,196 + 10448 mRNA_2080 0.16 -0.2
25,225 - 10448 mRNA_2080 0.22 -0.5
25,229 + 10448 mRNA_2080 0.23 -0.4
25,239 - 10448 mRNA_2080 0.25 -0.2
25,244 + 10448 mRNA_2080 0.26 -0.0
25,250 - 10448 mRNA_2080 0.27 +0.1
25,270 + 10448 mRNA_2080 0.32 -1.6
25,276 + 10448 mRNA_2080 0.33 +0.5
25,280 + 10448 mRNA_2080 0.34 -0.6
25,287 + 10448 mRNA_2080 0.35 +0.9
25,294 + 10448 mRNA_2080 0.37 +1.0
25,396 + 10448 mRNA_2080 0.59 +1.1
25,408 + 10448 mRNA_2080 0.62 +1.2
25,410 + 10448 mRNA_2080 0.62 +2.7
25,418 - 10448 mRNA_2080 0.64 -0.3
25,422 - 10448 mRNA_2080 0.65 -0.2
25,422 + 10448 mRNA_2080 0.65 +0.2
25,432 + 10448 mRNA_2080 0.67 -0.2
25,567 - -0.9
25,597 + -1.3
25,601 - -0.9
25,781 - 10449 mRNA_2081 0.10 +0.5
25,867 - 10449 mRNA_2081 0.15 -0.6
25,921 + 10449 mRNA_2081 0.17 -1.7
26,026 - 10449 mRNA_2081 0.23 -0.5
26,065 - 10449 mRNA_2081 0.25 -0.8
26,161 - 10449 mRNA_2081 0.29 +0.6
26,308 - 10449 mRNA_2081 0.37 +0.2
26,333 + 10449 mRNA_2081 0.38 -0.0
26,442 - 10449 mRNA_2081 0.44 -0.8
26,722 + 10449 mRNA_2081 0.58 -4.7
26,740 - 10449 mRNA_2081 0.59 -0.6
27,021 + 10449 mRNA_2081 0.73 -5.5
27,045 + 10449 mRNA_2081 0.74 -1.0
27,196 - 10449 mRNA_2081 0.82 -0.4
27,445 - +0.0
27,469 - -0.1
27,480 + -0.8
27,512 + +2.5
27,564 + +0.8
27,623 - +1.7
27,624 - +0.6
27,741 + +0.2
27,745 - -0.6
27,752 - -0.1
27,791 + -0.3
27,813 - -0.4
27,818 + -1.4
27,828 + -0.9
27,910 - +0.0
27,987 - +1.5
28,096 + 10450 mRNA_2082 0.15 -0.4
28,099 - 10450 mRNA_2082 0.15 +0.1
28,258 + 10450 mRNA_2082 0.27 +0.9
28,415 - 10450 mRNA_2082 0.39 -0.5
28,553 - 10450 mRNA_2082 0.49 +2.6

Or see this region's nucleotide sequence