Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2110

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10477 and 10478 are separated by 335 nucleotides10478 and 10479 are separated by 465 nucleotides mRNA_2109: 10477 - SUPERFAMILY--SSF56112, at 98,028 to 98,739 10477 mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99,075 to 100,834 10478 mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101,300 to 102,530 10479

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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98,142 - 10477 mRNA_2109 0.16 +0.4
98,475 - 10477 mRNA_2109 0.63 -0.3
98,479 - 10477 mRNA_2109 0.63 -1.3
98,479 + 10477 mRNA_2109 0.63 +0.5
98,485 + 10477 mRNA_2109 0.64 +0.4
98,617 - 10477 mRNA_2109 0.83 -0.2
98,741 - +1.1
98,814 - -0.0
98,897 - +0.1
98,908 - -0.0
98,911 + +1.4
98,913 + -1.2
99,019 + -0.6
99,023 + -1.4
99,079 - +0.0
99,208 - -0.2
99,231 - -1.0
99,346 - 10478 mRNA_2110 0.15 -2.5
100,055 + 10478 mRNA_2110 0.56 +0.7
100,242 + 10478 mRNA_2110 0.66 -1.2
100,366 - 10478 mRNA_2110 0.73 -1.4
100,579 - 10478 mRNA_2110 0.85 +0.1
100,641 - 10478 mRNA_2110 0.89 +1.5
101,102 - -0.5
101,113 - -0.2
101,113 - -0.3
101,138 + +1.0
101,141 - +0.9
101,242 - -0.0
101,262 + -1.2

Or see this region's nucleotide sequence