Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2133

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10500 and 10501 are separated by 456 nucleotides10501 and 10502 are separated by 326 nucleotides mRNA_2132: 10500 - Hypothetical Protein, at 144,026 to 145,888 10500 mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146,345 to 148,532 10501 mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148,859 to 150,709 10502

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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145,463 - 10500 mRNA_2132 0.77 +1.8
146,535 - +1.3
147,089 + 10501 mRNA_2133 0.34 -0.9
147,675 - 10501 mRNA_2133 0.61 +0.9
148,118 - 10501 mRNA_2133 0.81 +1.3
148,407 + -0.8
148,501 + +1.2
148,724 - +0.6
149,400 + 10502 mRNA_2134 0.29 -0.5

Or see this region's nucleotide sequence