Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2137

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10504 and 10505 are separated by 656 nucleotides10505 and 10506 are separated by 127 nucleotides mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153,030 to 154,707 10504 mRNA_2137: 10505 - Hypothetical Protein, at 155,364 to 157,707 10505 mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157,835 to 161,101 10506

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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154,391 - 10504 mRNA_2136 0.81 -0.0
154,446 - 10504 mRNA_2136 0.84 -1.5
154,688 - +0.6
154,839 - +1.9
155,435 + -0.8
155,436 - -0.6
155,442 + +1.8
155,451 - -1.1
155,562 - +0.5
155,717 + 10505 mRNA_2137 0.15 -0.0
155,975 + 10505 mRNA_2137 0.26 +1.0
156,185 + 10505 mRNA_2137 0.35 -0.0
156,307 + 10505 mRNA_2137 0.40 -0.7
156,330 - 10505 mRNA_2137 0.41 -0.4
156,485 - 10505 mRNA_2137 0.48 +0.4
156,821 - 10505 mRNA_2137 0.62 -0.1
156,977 + 10505 mRNA_2137 0.69 +1.0
157,248 + 10505 mRNA_2137 0.80 -0.9
157,542 + -0.3
157,816 + -0.2
157,830 - +0.8
157,835 - -0.9
157,960 - +1.2
158,134 + -0.7
158,137 + -0.7
158,156 - -0.1
158,446 + 10506 mRNA_2138 0.19 +0.6
158,534 - 10506 mRNA_2138 0.21 -0.9
158,604 + 10506 mRNA_2138 0.24 +0.7
158,626 + 10506 mRNA_2138 0.24 +0.7

Or see this region's nucleotide sequence