Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2147

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10514 and 10515 are separated by 98 nucleotides10515 and 10516 are separated by 120 nucleotides mRNA_2146: 10514 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 185,762 to 187,254 10514 mRNA_2147: 10515 - K01719 hemD, UROS uroporphyrinogen-III synthase, at 187,353 to 188,300 10515 mRNA_2148: 10516 - KOG2490 Predicted membrane protein, at 188,421 to 191,027 10516

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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186,415 - 10514 mRNA_2146 0.44 -1.1
186,469 - 10514 mRNA_2146 0.47 -0.9
186,755 - 10514 mRNA_2146 0.67 -0.8
187,176 + +1.3
187,183 - -1.5
187,186 - -1.0
188,309 + +1.2
188,392 + -1.1
188,393 + +1.0
188,675 + +1.1

Or see this region's nucleotide sequence