Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2151

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10518 and 10519 are separated by 233 nucleotides10519 and 10520 are separated by 113 nucleotides mRNA_2150: 10518 - Hypothetical Protein, at 192,227 to 192,680 10518 mRNA_2151: 10519 - K03348 APC1 anaphase-promoting complex subunit 1, at 192,914 to 199,163 10519 mRNA_2152: 10520 - KOG2887 Membrane protein involved in ER to Golgi transport, at 199,277 to 200,467 10520

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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192,076 + -1.1
192,078 + -0.4
192,220 + -0.4
192,653 + -3.1
192,934 - +0.9
194,095 - 10519 mRNA_2151 0.19 -0.3
194,126 - 10519 mRNA_2151 0.19 +0.9
194,281 - 10519 mRNA_2151 0.22 -0.6
194,397 + 10519 mRNA_2151 0.24 +0.8
194,592 + 10519 mRNA_2151 0.27 +0.0
194,681 + 10519 mRNA_2151 0.28 +0.3
194,803 - 10519 mRNA_2151 0.30 +2.3
194,836 - 10519 mRNA_2151 0.31 +0.2
197,996 - 10519 mRNA_2151 0.81 +0.2
198,918 + -0.3
199,186 + -0.1
199,189 - +2.0
199,296 + -0.7
199,620 + 10520 mRNA_2152 0.29 +1.2
199,625 + 10520 mRNA_2152 0.29 -0.5
199,780 + 10520 mRNA_2152 0.42 +0.6
199,793 - 10520 mRNA_2152 0.43 +1.6
199,914 - 10520 mRNA_2152 0.53 +1.1
200,040 - 10520 mRNA_2152 0.64 +0.1
200,047 + 10520 mRNA_2152 0.65 +0.5
200,049 + 10520 mRNA_2152 0.65 -0.9

Or see this region's nucleotide sequence