Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2171

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10538 and 10539 are separated by 419 nucleotides10539 and 10540 are separated by 385 nucleotides mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240,753 to 243,794 10538 mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244,214 to 249,218 10539 mRNA_2172: 10540 - K00968 PCYT1 choline-phosphate cytidylyltransferase, at 249,604 to 252,159 10540

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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243,260 - 10538 mRNA_2170 0.82 -0.5
243,889 + +2.9
244,018 - +1.6
244,023 - -0.3
244,023 + +0.7
244,162 + +0.2
244,163 - +0.5
244,163 - +0.5
244,182 - -0.7
244,188 + +0.4
244,272 + -0.4
244,455 - +0.8
244,489 + -0.1
244,624 - +0.3
244,626 + +0.2
245,074 + 10539 mRNA_2171 0.17 -1.3
245,104 - 10539 mRNA_2171 0.18 +0.5
245,111 - 10539 mRNA_2171 0.18 -0.7
245,311 + 10539 mRNA_2171 0.22 +1.5
245,602 - 10539 mRNA_2171 0.28 +0.7
245,605 + 10539 mRNA_2171 0.28 +0.5
245,651 + 10539 mRNA_2171 0.29 -1.2
245,723 - 10539 mRNA_2171 0.30 -0.5
245,746 + 10539 mRNA_2171 0.31 -2.2
245,746 - 10539 mRNA_2171 0.31 -0.5
245,773 + 10539 mRNA_2171 0.31 -1.3
246,024 + 10539 mRNA_2171 0.36 +1.3
246,217 - 10539 mRNA_2171 0.40 -0.5
246,551 - 10539 mRNA_2171 0.47 -0.7
246,628 + 10539 mRNA_2171 0.48 -0.7
246,747 - 10539 mRNA_2171 0.51 +2.0
246,759 + 10539 mRNA_2171 0.51 +1.7
246,762 - 10539 mRNA_2171 0.51 -0.4
246,768 + 10539 mRNA_2171 0.51 -0.6
246,884 + 10539 mRNA_2171 0.53 +0.5
247,191 - 10539 mRNA_2171 0.59 +1.6
247,352 - 10539 mRNA_2171 0.63 -0.4
247,673 - 10539 mRNA_2171 0.69 +0.8
247,679 + 10539 mRNA_2171 0.69 -0.9
247,864 + 10539 mRNA_2171 0.73 -0.9
248,345 - 10539 mRNA_2171 0.83 -0.1
248,650 + 10539 mRNA_2171 0.89 +0.3
248,656 + 10539 mRNA_2171 0.89 +0.3
248,956 - +0.7
248,969 - -0.1
249,116 - -0.0
249,242 - +1.0
249,271 + +2.0
249,515 + +0.9
249,647 - +0.3

Or see this region's nucleotide sequence