Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2180

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10547 and 10548 are separated by 634 nucleotides mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268,224 to 273,308 10547 mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273,943 to 276,215 10548

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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273,226 - +1.3
273,232 - -0.1
273,263 - +1.7
273,374 - +0.8
273,402 + -1.0
273,529 - -2.0
273,531 - +1.3
273,542 + +1.8
273,560 + -0.5
273,565 - +0.2
273,566 + -1.2
273,846 + +0.4
274,173 - 10548 mRNA_2180 0.10 +0.9
274,231 - 10548 mRNA_2180 0.13 +0.2
274,389 - 10548 mRNA_2180 0.20 +0.1
274,397 + 10548 mRNA_2180 0.20 -1.1
274,558 + 10548 mRNA_2180 0.27 +0.7
274,563 - 10548 mRNA_2180 0.27 +0.9
274,982 - 10548 mRNA_2180 0.46 -1.3
275,126 - 10548 mRNA_2180 0.52 -0.0
275,178 - 10548 mRNA_2180 0.54 -0.9
275,236 - 10548 mRNA_2180 0.57 -1.0
275,410 + 10548 mRNA_2180 0.65 +0.2
275,820 - 10548 mRNA_2180 0.83 -0.8
276,122 - -1.6
276,272 - -1.3
276,289 + +0.5
276,316 - +0.2
276,330 - -0.9
276,456 - +1.3
276,881 - +0.0
276,899 + +1.1

Or see this region's nucleotide sequence