Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2195

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10563 and 10564 are separated by 316 nucleotides mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008 10563 mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323,325 to 326,120 10564

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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318,739 - +0.5
318,774 + +0.7
318,978 + -0.1
319,016 + +0.7
319,059 + +2.1
319,069 + -1.5
319,172 + -1.1
319,175 - -0.2
319,213 - -0.1
319,261 - -0.6
319,268 - +0.3
319,277 + +0.8
319,286 - +2.3
319,321 - +0.3
319,347 - +1.8
319,357 + +1.5
319,369 + -1.2
319,401 + +2.3
319,403 - -2.0
319,481 + -1.0
319,628 - -0.9
319,790 + -0.4
319,911 + 10563 mRNA_2195 0.13 -0.1
319,941 + 10563 mRNA_2195 0.13 +1.3
319,965 + 10563 mRNA_2195 0.14 -0.0
320,051 - 10563 mRNA_2195 0.17 -0.6
320,089 + 10563 mRNA_2195 0.18 +0.3
320,243 + 10563 mRNA_2195 0.22 -0.5
320,409 + 10563 mRNA_2195 0.27 +0.3
320,526 - 10563 mRNA_2195 0.30 -1.3
320,577 - 10563 mRNA_2195 0.31 -0.4
320,627 + 10563 mRNA_2195 0.33 +0.1
320,644 - 10563 mRNA_2195 0.33 +0.1
320,700 - 10563 mRNA_2195 0.35 -0.6
320,700 + 10563 mRNA_2195 0.35 -1.0
320,802 + 10563 mRNA_2195 0.38 +0.0
320,811 + 10563 mRNA_2195 0.38 -1.7
320,870 - 10563 mRNA_2195 0.40 -0.8
321,251 - 10563 mRNA_2195 0.50 +0.5
321,261 + 10563 mRNA_2195 0.51 +1.2
321,271 + 10563 mRNA_2195 0.51 +0.1
321,390 + 10563 mRNA_2195 0.54 +0.5
321,411 + 10563 mRNA_2195 0.55 +2.7
321,569 + 10563 mRNA_2195 0.59 +1.9
321,588 - 10563 mRNA_2195 0.60 +0.8
321,762 - 10563 mRNA_2195 0.65 -1.1
321,854 + 10563 mRNA_2195 0.67 +0.9
321,877 + 10563 mRNA_2195 0.68 -0.6
321,877 + 10563 mRNA_2195 0.68 -0.3
321,880 + 10563 mRNA_2195 0.68 +0.1
321,883 - 10563 mRNA_2195 0.68 +1.2
321,917 - 10563 mRNA_2195 0.69 -0.2
321,988 - 10563 mRNA_2195 0.71 +1.2
322,060 + 10563 mRNA_2195 0.73 -0.7
322,064 + 10563 mRNA_2195 0.73 -0.2
322,151 - 10563 mRNA_2195 0.76 -2.5
322,222 - 10563 mRNA_2195 0.78 -1.8
322,313 - 10563 mRNA_2195 0.80 +0.2
322,331 - 10563 mRNA_2195 0.81 -0.7
322,463 + 10563 mRNA_2195 0.85 -0.1
322,578 + 10563 mRNA_2195 0.88 -0.1
322,897 - -0.5
323,314 + +0.1
323,318 - -0.1
323,445 + -0.2
323,627 + 10564 mRNA_2196 0.11 +0.4
323,823 - 10564 mRNA_2196 0.18 +0.6
323,843 - 10564 mRNA_2196 0.19 +0.9

Or see this region's nucleotide sequence