Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2228

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10595 and 10596 are separated by 131 nucleotides mRNA_2227: 10595 - K12392 AP1B1 AP-1 complex subunit beta-1, at 409,342 to 412,255 10595 mRNA_2228: 10596 - K14191 DIM1 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase, at 412,387 to 413,949 10596

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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412,306 - +0.0
412,309 + -1.4
412,315 + +0.3
412,319 + -1.2
412,335 + +1.9
412,353 - +0.6
414,083 - +2.2
414,118 + -0.4
414,210 - -1.7
414,217 + -0.7
414,217 - +0.1
414,234 + -0.8
414,236 - +0.9
414,241 + -0.2
414,291 - +0.4
414,352 - +0.8
414,406 + +1.0
414,429 - -0.6
414,441 + -2.0
414,571 + -0.2

Or see this region's nucleotide sequence