Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2233

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10600 and 10601 are separated by 73 nucleotides mRNA_2232: 10600 - Hypothetical Protein, at 424,627 to 425,038 10600 mRNA_2233: 10601 - Hypothetical Protein, at 425,112 to 425,465 10601

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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424,209 - -1.0
424,260 - +1.2
424,411 - -0.7
424,664 - +3.4
424,734 - 10600 mRNA_2232 0.26 +1.9
424,800 + 10600 mRNA_2232 0.42 +1.4
424,874 + 10600 mRNA_2232 0.60 -0.7
424,996 + 10600 mRNA_2232 0.90 +0.3
425,016 - -3.5
425,022 - -0.1
425,086 - -1.4
425,268 - 10601 mRNA_2233 0.44 -2.6
425,271 + 10601 mRNA_2233 0.45 -1.7
425,298 + 10601 mRNA_2233 0.53 +0.0
425,443 - +1.0
425,628 + +0.0
425,716 + +1.1
426,239 - +0.1
426,263 + -0.2
426,421 - -0.4

Or see this region's nucleotide sequence