Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2256

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10623 and 10624 are separated by 152 nucleotides10624 and 10625 are separated by 303 nucleotides mRNA_2255: 10623 - Hypothetical Protein, at 471,819 to 472,358 10623 mRNA_2256: 10624 - K14293 KPNB1, IPO1 importin subunit beta-1, at 472,511 to 475,600 10624 mRNA_2257: 10625 - K12626 LSM7 U6 snRNA-associated Sm-like protein LSm7, at 475,904 to 476,538 10625

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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471,688 - -1.1
472,305 - +0.0
472,309 - +1.3
475,655 - -0.3
475,661 + +0.8
475,734 + -0.4
475,743 - -1.5
475,746 + +0.8
475,748 - +0.1
475,749 - +0.0
475,862 + -1.9

Or see this region's nucleotide sequence