Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2262

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10629 and 10630 are separated by 180 nucleotides mRNA_2261: 10629 - K12670 WBP1 oligosaccharyltransferase complex subunit beta, at 481,002 to 482,394 10629 mRNA_2262: 10630 - KOG0899 Mitochondrial/chloroplast ribosomal protein S19, at 482,575 to 483,044 10630

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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482,476 + +0.3
482,503 + -0.4
482,612 - -0.1
482,644 - 10630 mRNA_2262 0.15 -0.5
483,081 - -0.2
483,091 + -3.4
483,092 - +0.2
483,099 - -0.5
483,101 - -2.5
483,101 - -1.3
483,113 - +1.8
483,115 - -1.1
483,214 - +0.8
483,514 - +0.2
483,540 + +0.2
483,544 + -0.7
483,548 - -0.1
483,665 + +0.3
483,687 - -0.4
483,692 + +0.2
483,801 + +0.2
483,836 - -0.0
483,951 - +1.1

Or see this region's nucleotide sequence