Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2281

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10648 and 10649 are separated by 232 nucleotides10649 and 10650 are separated by 842 nucleotides mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511,379 to 518,850 10648 mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519,083 to 521,393 10649 mRNA_2282: 10650 - HMMPfam-Conidiation protein 6-PF10346, at 522,236 to 522,967 10650

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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518,852 + +0.5
518,966 + +0.4
518,985 - -0.4
518,998 - -0.3
519,004 - -0.7
519,027 - +1.0
519,087 + -2.3
519,376 - 10649 mRNA_2281 0.13 -2.0
520,061 + 10649 mRNA_2281 0.42 +0.3
520,370 + 10649 mRNA_2281 0.56 -0.0
521,269 + -0.0
521,291 + -3.2
521,326 + +0.3
521,403 - -1.2
521,410 + -0.5
521,561 - +0.5
521,564 - -1.0
521,567 - -0.9
521,568 + +2.3
521,568 + +1.7
521,569 - +1.5
521,569 + +0.7
521,603 - -0.6
521,621 - -0.7
521,627 - +1.0
521,643 + -0.2
521,655 - -1.0
521,657 + -0.4
521,701 + -0.5
521,703 - +0.9
521,713 + +0.4
521,720 - -0.1
521,865 + -1.6
521,914 + -0.3
522,015 + -0.0
522,045 + -0.3

Or see this region's nucleotide sequence