Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2296

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10662 and 10663 are separated by 123 nucleotides10663 and 10664 are separated by 77 nucleotides10664 and 10665 are separated by 689 nucleotides mRNA_2294: 10662 - KOG4131 Ngg1-interacting factor 3 protein NIF3L1, at 547,521 to 548,816 10662 mRNA_2295: 10663 - BLAST CsbD-like [Xanthophyllomyces dendrorhous], at 548,940 to 549,587 10663 mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549,665 to 551,990 10664 mRNA_2297: 10665 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 552,680 to 555,232 10665

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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548,935 + -0.3
549,313 + 10663 mRNA_2295 0.58 +0.4
549,323 + 10663 mRNA_2295 0.59 -0.6
549,325 - 10663 mRNA_2295 0.59 +1.3
549,335 + 10663 mRNA_2295 0.61 +1.0
549,335 - 10663 mRNA_2295 0.61 +1.6
549,338 + 10663 mRNA_2295 0.61 +0.3
549,454 - 10663 mRNA_2295 0.79 +0.5
549,488 + 10663 mRNA_2295 0.85 -0.8
549,505 - 10663 mRNA_2295 0.87 -1.1
549,635 - +0.3
552,154 + +0.0
552,155 + -0.8
552,288 - -0.8
552,292 + +1.1
552,328 + -3.1
552,430 - +1.0
552,442 - +0.3
552,444 - +0.9
552,449 - -1.5
552,450 - +0.3
552,460 + +0.6
552,462 - -1.1
552,467 + -0.5
552,568 + -1.5
552,590 + -0.0
552,590 + -0.0
552,599 - +1.3
552,609 + +0.8
552,654 + -0.6
552,733 + +0.8
552,774 + +0.1
552,893 - +0.0

Or see this region's nucleotide sequence