Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2298

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10665 and 10666 are separated by 208 nucleotides10666 and 10667 are separated by 569 nucleotides mRNA_2297: 10665 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 552,680 to 555,232 10665 mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555,441 to 556,485 10666 mRNA_2299: 10667 - Hypothetical Protein, at 557,055 to 559,337 10667

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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555,638 + 10666 mRNA_2298 0.19 -0.9
555,642 - 10666 mRNA_2298 0.19 +2.5
555,653 - 10666 mRNA_2298 0.20 -0.2
555,653 + 10666 mRNA_2298 0.20 -0.1
556,541 + -0.1
556,659 + +2.0
556,673 - -1.1
556,700 - +0.5
556,852 - +1.0
556,926 - -1.0
556,944 + -0.4
557,102 - +0.1
557,475 + 10667 mRNA_2299 0.18 +2.6

Or see this region's nucleotide sequence