Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2308

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10675 and 10676 are separated by 217 nucleotides10676 and 10677 are separated by 368 nucleotides mRNA_2307: 10675 - HMMPfam-Mitochondrial ATPase inhibitor, IATP-PF04568,SUPERFAMILY--SSF64602, at 572,291 to 573,066 10675 mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573,284 to 575,347 10676 mRNA_2309: 10677 - K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 575,716 to 577,026 10677

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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572,291 + -1.0
572,363 + +0.6
572,416 + 10675 mRNA_2307 0.16 +0.8
572,417 + 10675 mRNA_2307 0.16 -1.3
572,421 - 10675 mRNA_2307 0.17 -1.6
572,423 - 10675 mRNA_2307 0.17 -0.1
572,431 - 10675 mRNA_2307 0.18 -1.9
572,441 + 10675 mRNA_2307 0.19 -0.0
572,449 + 10675 mRNA_2307 0.20 -0.4
572,469 + 10675 mRNA_2307 0.23 +0.3
572,666 - 10675 mRNA_2307 0.48 -0.8
572,800 + 10675 mRNA_2307 0.66 +0.3
572,979 - 10675 mRNA_2307 0.89 -0.2
573,011 - +1.7
573,132 + -0.2
573,138 - +0.2
573,138 + -0.0
573,178 + -0.3
573,180 - -0.0
573,181 + -1.1
573,183 + +0.9
573,189 + +0.6
573,189 + -1.3
573,192 - -1.2
573,196 - -2.1
573,198 - -0.4
573,198 + +0.0
573,199 + -0.3
573,203 - -0.5
573,206 + +0.2
573,212 + +0.5
573,214 - -0.3
573,220 - +1.1
573,230 + -0.9
573,233 + +0.4
573,236 - -0.1
573,236 + -0.2
573,248 - -1.7
573,338 - +2.6
573,346 - +0.1
573,363 + +3.2
573,373 - -2.2
573,376 + +1.5
573,487 - +0.1
573,496 - 10676 mRNA_2308 0.10 -0.5
573,501 - 10676 mRNA_2308 0.11 +0.1
573,506 - 10676 mRNA_2308 0.11 +1.1
573,519 + 10676 mRNA_2308 0.11 +0.6
573,600 - 10676 mRNA_2308 0.15 +2.0
573,665 - 10676 mRNA_2308 0.18 -0.2
574,277 - 10676 mRNA_2308 0.48 -0.3
574,332 - 10676 mRNA_2308 0.51 +0.4
574,350 - 10676 mRNA_2308 0.52 +0.7
574,364 + 10676 mRNA_2308 0.52 +0.2
574,653 - 10676 mRNA_2308 0.66 -0.4
575,206 + -0.9
575,327 - +0.6
575,368 - -0.8
575,619 + +2.5
575,652 + -0.3
575,789 - +0.3

Or see this region's nucleotide sequence