Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2336

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10703 and 10704 are separated by 635 nucleotides10704 and 10705 are separated by 38 nucleotides mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648,018 to 653,331 10703 mRNA_2336: 10704 - KOG0254 Predicted transporter (major facilitator superfamily), at 653,967 to 656,080 10704 mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656,119 to 656,520 10705

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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653,057 - +0.1
653,226 - +0.1
653,541 + +1.3
653,675 - +1.4
653,682 + +0.4
653,811 + +0.5
653,811 + +1.1
653,822 - -0.9
654,121 - -0.3
654,260 - 10704 mRNA_2336 0.14 +0.5
654,536 - 10704 mRNA_2336 0.27 -0.3
654,832 - 10704 mRNA_2336 0.41 -0.2
655,016 + 10704 mRNA_2336 0.50 -0.4
655,397 - 10704 mRNA_2336 0.68 +1.5
655,696 + 10704 mRNA_2336 0.82 +0.6
655,989 + +0.4
656,032 - +1.4
656,275 + 10705 mRNA_2337 0.39 +1.1
656,277 - 10705 mRNA_2337 0.39 +0.4
656,283 + 10705 mRNA_2337 0.41 +1.0
656,284 - 10705 mRNA_2337 0.41 +1.2
656,373 - 10705 mRNA_2337 0.63 +0.4
656,417 - 10705 mRNA_2337 0.74 +0.3
656,417 - 10705 mRNA_2337 0.74 +0.4
656,430 + 10705 mRNA_2337 0.77 -0.2
656,430 - 10705 mRNA_2337 0.77 +0.1
656,441 + 10705 mRNA_2337 0.80 +0.7
656,474 + 10705 mRNA_2337 0.88 -1.3
656,589 + +1.8
656,589 - -2.1
656,591 - +0.7
656,606 + +0.5
656,612 + +0.5
656,626 + -0.2
656,629 - -0.2
656,629 + +0.1
656,637 - -0.4
656,663 + +1.3
656,672 + +1.9
656,672 - +0.0
656,679 - +0.9
656,682 + +0.4
656,688 + +0.2
656,724 + -1.6
656,742 + +0.5
656,755 - +0.3
656,778 - -0.2
656,791 - +1.9
656,816 - +0.6
656,816 - +0.6
656,832 + -0.2
656,856 - -0.6
656,890 - +1.8
656,899 - -1.4
656,901 - -0.3
656,921 - +0.8
656,923 - -1.0
656,923 - +0.2
656,925 - -0.3
656,930 - -0.1
656,945 + -1.6
656,960 + +0.8
656,960 - -0.8
656,961 + +0.1
656,978 + -0.3
656,978 - -1.0
656,980 - +0.1
656,987 - +0.0
656,990 + -0.5
656,992 - +0.1
656,997 - -0.6
657,029 - +0.1
657,039 + +1.6
657,067 - +0.4
657,077 + +0.1

Or see this region's nucleotide sequence