Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2350

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10717 and 10718 are separated by 285 nucleotides mRNA_2349: 10717 - KOG3419 Mitochondrial/chloroplast ribosomal protein S16, at 683,294 to 683,869 10717 mRNA_2350: 10718 - K14829 IPI3 pre-rRNA-processing protein IPI3, at 684,155 to 686,161 10718

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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683,260 - -1.3
686,131 + -0.2
686,161 + -0.1
686,174 - +1.0
686,174 + -1.5
686,186 - +1.8
686,344 + +0.2
686,446 + +1.3
686,906 + -3.1
686,915 + -0.1

Or see this region's nucleotide sequence