Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2360

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10727 and 10728 are separated by 836 nucleotides10728 and 10729 are separated by 421 nucleotides mRNA_2359: 10727 - K02927 RP-L40e, RPL40 large subunit ribosomal protein L40e, at 700,994 to 701,674 10727 mRNA_2360: 10728 - Hypothetical Protein, at 702,511 to 702,996 10728 mRNA_2361: 10729 - Hypothetical Protein, at 703,418 to 705,625 10729

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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702,117 + +2.6
702,124 + +0.3
702,160 - +1.5
702,316 + -0.9
702,318 + -0.2
702,448 - -0.1
702,589 - 10728 mRNA_2360 0.16 -0.2
702,618 - 10728 mRNA_2360 0.22 -0.1
702,895 + 10728 mRNA_2360 0.79 +0.8
703,058 + +2.2
703,179 - -1.3
703,350 + +0.3
703,585 + -1.8
703,929 - 10729 mRNA_2361 0.23 +1.1

Or see this region's nucleotide sequence