Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2364

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10731 and 10732 are separated by 845 nucleotides10732 and 10733 are separated by 750 nucleotides mRNA_2363: 10731 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 709,959 to 711,160 10731 mRNA_2364: 10732 - K20471 COPD, ARCN1, RET2 coatomer subunit delta, at 712,006 to 714,085 10732 mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714,836 to 719,439 10733

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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711,036 - 10731 mRNA_2363 0.90 -0.8
711,042 + +0.2
711,465 - -0.2
711,507 - -0.6
711,509 - -1.4
711,677 + -1.2
711,718 + +0.5
711,722 - -1.0
711,722 + +0.1
711,729 - +0.3
711,743 + +0.5
713,282 - 10732 mRNA_2364 0.61 +1.5
714,312 - +1.4
714,324 + +0.1
714,477 + -0.3
714,485 - +1.9
714,612 - -0.2
714,616 - +1.4
714,788 - -2.9

Or see this region's nucleotide sequence