Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2368

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10735 and 10736 are separated by 634 nucleotides mRNA_2367: 10735 - HMMPfam-Salt tolerance down-regulator-PF13945, at 723,290 to 728,071 10735 mRNA_2368: 10736 - Hypothetical Protein, at 728,706 to 728,915 10736

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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727,884 - -0.8
728,032 - -0.2
728,175 + -1.0
728,178 - +0.7
728,187 + +0.6
728,189 - -1.1
728,194 - -0.5
728,197 + -2.4
728,197 - +0.9
728,205 - +1.2
728,208 + -0.4
728,212 + +1.5
728,334 - +0.5
728,344 - +0.3
728,368 + -0.3
728,477 - +1.9
728,486 - +1.0
728,525 - +0.2
728,621 - -1.5
728,757 + 10736 mRNA_2368 0.24 +0.9
729,350 - +0.1
729,505 - +0.8
729,629 - +0.6
729,635 + +0.1
729,650 - -0.9
729,658 - -0.3

Or see this region's nucleotide sequence