Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2371

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10738 and 10739 are separated by 20 nucleotides mRNA_2370: 10738 - K01410 MIPEP mitochondrial intermediate peptidase, at 732,423 to 734,982 10738 mRNA_2371: 10739 - BLAST Tubulin beta-2 chain [Grifola frondosa], at 735,003 to 736,788 10739

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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735,011 + +1.3
735,457 + 10739 mRNA_2371 0.25 +1.4
736,053 - 10739 mRNA_2371 0.59 -0.0
736,324 + 10739 mRNA_2371 0.74 -0.3
736,329 + 10739 mRNA_2371 0.74 -1.5
736,786 - -0.7
736,794 + +0.5
736,888 - -0.9
736,889 + -0.8
736,899 - +0.4
736,987 - -0.7
737,029 + +0.5
737,042 - +0.1
737,053 + -0.2
737,054 - -0.6
737,065 - -0.0
737,065 + +2.5
737,122 - +0.3
737,171 + -1.8
737,176 - +0.1
737,180 - +0.3
737,181 + +1.6
737,184 + -1.1
737,198 + +0.9
737,246 - +0.8
737,258 - -0.2
737,267 - +0.4
737,310 + +0.7
737,312 + -0.1
737,314 - +1.0
737,383 - +0.6
737,416 + +0.5
737,473 - +0.4
737,660 - +0.5
737,666 - +0.6
737,674 + -0.4
737,676 + -0.1
737,686 + -0.4

Or see this region's nucleotide sequence