Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2378

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10745 and 10746 are separated by 983 nucleotides10746 and 10747 are separated by 138 nucleotides mRNA_2377: 10745 - KOG0725 Reductases with broad range of substrate specificities, at 751,815 to 752,999 10745 mRNA_2378: 10746 - Hypothetical Protein, at 753,983 to 754,459 10746 mRNA_2379: 10747 - HMMPfam-DASH complex subunit Duo1-PF08651, at 754,598 to 756,012 10747

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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753,056 - +0.6
753,495 + -0.2
753,495 + -2.3
753,637 - +0.5
754,184 + 10746 mRNA_2378 0.42 +2.3
754,363 - 10746 mRNA_2378 0.80 +1.4
754,365 - 10746 mRNA_2378 0.80 +1.4
754,536 - -0.1
754,564 - -0.6
754,571 + +1.1
754,816 + 10747 mRNA_2379 0.15 +1.2
755,360 + 10747 mRNA_2379 0.54 +0.3
755,375 + 10747 mRNA_2379 0.55 +0.4
755,397 + 10747 mRNA_2379 0.56 +1.7

Or see this region's nucleotide sequence