Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2398

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10765 and 10766 are separated by 97 nucleotides10766 and 10767 are separated by 229 nucleotides mRNA_2397: 10765 - Hypothetical Protein, at 21,326 to 23,910 10765 mRNA_2398: 10766 - SUPERFAMILY--SSF52047, at 24,008 to 25,280 10766 mRNA_2399: 10767 - Hypothetical Protein, at 25,510 to 29,581 10767

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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23,076 - 10765 mRNA_2397 0.68 +0.9
23,087 - 10765 mRNA_2397 0.68 +1.5
23,205 - 10765 mRNA_2397 0.73 -1.0
23,224 - 10765 mRNA_2397 0.73 -0.3
23,495 - 10765 mRNA_2397 0.84 -0.1
23,667 - -2.2
23,682 + -2.1
23,780 - +0.9
23,789 + +1.1
23,790 + -0.5
23,814 + +1.4
23,941 - -1.4
23,953 + -0.5
23,955 + -0.3
24,014 + +0.3
24,021 + +1.2
24,121 + +1.6
24,133 - +1.0
24,145 + 10766 mRNA_2398 0.11 -0.2
24,169 - 10766 mRNA_2398 0.13 -0.4
24,440 - 10766 mRNA_2398 0.34 +0.1
24,579 - 10766 mRNA_2398 0.45 +1.5
24,581 - 10766 mRNA_2398 0.45 -0.6
24,720 - 10766 mRNA_2398 0.56 +1.2
24,750 + 10766 mRNA_2398 0.58 -0.8
24,773 + 10766 mRNA_2398 0.60 +2.1
24,856 - 10766 mRNA_2398 0.67 +0.5
24,895 + 10766 mRNA_2398 0.70 +1.6
24,895 + 10766 mRNA_2398 0.70 -1.1
25,005 - 10766 mRNA_2398 0.78 +1.0
25,028 + 10766 mRNA_2398 0.80 -0.1
25,164 + +1.2
25,306 + -1.1
25,422 + -0.3
25,454 - -0.7
25,493 - +0.8
25,693 + +0.3
25,696 - +0.1
25,750 - -0.7
25,857 + -0.2
26,023 + 10767 mRNA_2399 0.13 +1.4

Or see this region's nucleotide sequence