Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2414

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10782 and 10783 are separated by 41 nucleotides mRNA_2414: 10782 - KOG1185 Thiamine pyrophosphate-requiring enzyme, at 67,466 to 70,057 10782 mRNA_2415: 10783 - Hypothetical Protein, at 70,099 to 71,162 10783

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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66,594 - -0.6
66,603 - +1.4
66,880 + -0.0
66,911 + +1.0
67,040 - -0.8
67,080 + +2.8
67,168 - -0.7
67,170 - +2.4
67,175 + +0.0
67,186 + -0.3
67,215 - +1.8
67,217 + -0.4
67,227 - -0.3
67,357 + -2.9
67,389 + +1.1
67,519 - -0.4
67,534 + +0.1
67,537 + -1.1
67,543 + -0.3
67,543 - -1.2
67,560 - -0.2
67,580 + +0.9
67,658 + -0.1
67,979 - 10782 mRNA_2414 0.20 +0.5
68,074 - 10782 mRNA_2414 0.23 -0.8
68,147 + 10782 mRNA_2414 0.26 +1.1
68,165 - 10782 mRNA_2414 0.27 -0.5
68,275 + 10782 mRNA_2414 0.31 +1.2
68,394 + 10782 mRNA_2414 0.36 -1.3
68,560 + 10782 mRNA_2414 0.42 +0.6
68,735 - 10782 mRNA_2414 0.49 +2.2
68,777 + 10782 mRNA_2414 0.51 +1.6
68,884 - 10782 mRNA_2414 0.55 +0.8
68,893 + 10782 mRNA_2414 0.55 -1.2
68,978 + 10782 mRNA_2414 0.58 +0.5
69,123 - 10782 mRNA_2414 0.64 -0.1
69,146 - 10782 mRNA_2414 0.65 -0.1
69,689 - 10782 mRNA_2414 0.86 -0.7
69,712 + 10782 mRNA_2414 0.87 -1.6
69,732 - 10782 mRNA_2414 0.87 +0.7
69,744 - 10782 mRNA_2414 0.88 -0.4
69,875 + -1.5
70,079 + -0.7
70,084 + +1.8
70,192 + -0.4
70,192 - +0.2
70,308 + 10783 mRNA_2415 0.20 -0.1
70,478 + 10783 mRNA_2415 0.36 +0.8
70,480 - 10783 mRNA_2415 0.36 +0.5
70,499 - 10783 mRNA_2415 0.38 +1.4
70,606 + 10783 mRNA_2415 0.48 -1.3
70,613 - 10783 mRNA_2415 0.48 -0.4
70,638 + 10783 mRNA_2415 0.51 +0.8
70,675 - 10783 mRNA_2415 0.54 -2.1
70,901 + 10783 mRNA_2415 0.75 +2.3
70,909 + 10783 mRNA_2415 0.76 +0.2
70,967 + 10783 mRNA_2415 0.82 +1.2

Or see this region's nucleotide sequence