Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2421

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10788 and 10789 are separated by 126 nucleotides10789 and 10790 are separated by 140 nucleotides mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80,430 to 82,352 10788 mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82,479 to 84,495 10789 mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84,636 to 85,865 10790

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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81,484 - 10788 mRNA_2420 0.55 +2.0
81,764 + 10788 mRNA_2420 0.69 +1.1
82,499 - -0.9
82,566 - -0.1
83,061 - 10789 mRNA_2421 0.29 -2.2
83,246 + 10789 mRNA_2421 0.38 +1.5
83,395 + 10789 mRNA_2421 0.45 +1.9
83,542 - 10789 mRNA_2421 0.53 +0.7
83,695 + 10789 mRNA_2421 0.60 -0.7
84,122 - 10789 mRNA_2421 0.81 +0.3
84,122 - 10789 mRNA_2421 0.81 -0.7
84,129 + 10789 mRNA_2421 0.82 +0.1
84,129 + 10789 mRNA_2421 0.82 +0.0
84,375 - +0.5
84,376 - +0.8
84,835 + 10790 mRNA_2422 0.16 -0.7
84,838 - 10790 mRNA_2422 0.16 +1.0
84,839 + 10790 mRNA_2422 0.17 +1.6
84,848 - 10790 mRNA_2422 0.17 -1.0
84,872 - 10790 mRNA_2422 0.19 +0.2
84,894 - 10790 mRNA_2422 0.21 +0.6
85,177 - 10790 mRNA_2422 0.44 +0.8
85,193 + 10790 mRNA_2422 0.45 +0.5
85,195 - 10790 mRNA_2422 0.45 -2.1

Or see this region's nucleotide sequence