Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2426

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10793 and 10794 are separated by 373 nucleotides10794 and 10795 are separated by 549 nucleotides mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91,083 to 92,591 10793 mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92,965 to 95,698 10794 mRNA_2427: 10795 - Hypothetical Protein, at 96,248 to 96,907 10795

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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92,662 - -0.1
92,662 - +0.3
92,667 + +0.9
92,681 + +1.0
92,783 - +1.7
92,788 - -1.7
92,828 - -0.5
92,985 + +0.9
93,022 + +0.7
93,118 - +2.3
93,523 + 10794 mRNA_2426 0.20 -0.3
93,553 + 10794 mRNA_2426 0.22 +0.6
93,680 + 10794 mRNA_2426 0.26 -1.2
93,708 - 10794 mRNA_2426 0.27 +0.4
93,774 + 10794 mRNA_2426 0.30 +1.7
93,800 + 10794 mRNA_2426 0.31 +1.8
94,789 + 10794 mRNA_2426 0.67 -0.5
94,905 + 10794 mRNA_2426 0.71 +0.2
95,274 - 10794 mRNA_2426 0.84 -0.4
95,336 - 10794 mRNA_2426 0.87 -2.2
95,671 - -0.8
95,787 - -0.9
95,806 + -1.3
95,828 + +1.3
95,971 - +0.7
95,971 + -0.3
96,107 + -1.1
96,148 - -0.2
96,152 - -0.4
96,247 - +0.9
96,267 - +0.7
96,272 + -0.6
96,278 + +0.4
96,280 - -0.8
96,286 - -1.9
96,299 - +0.1
96,308 - +0.3
96,317 - 10795 mRNA_2427 0.10 -0.1
96,328 + 10795 mRNA_2427 0.12 -0.7
96,412 + 10795 mRNA_2427 0.25 -0.5
96,423 - 10795 mRNA_2427 0.27 +1.0
96,453 + 10795 mRNA_2427 0.31 -0.2
96,513 - 10795 mRNA_2427 0.40 +0.0
96,535 + 10795 mRNA_2427 0.43 -1.8
96,543 - 10795 mRNA_2427 0.45 +0.7
96,547 - 10795 mRNA_2427 0.45 +1.0
96,548 + 10795 mRNA_2427 0.45 +0.7
96,566 + 10795 mRNA_2427 0.48 +0.2
96,575 + 10795 mRNA_2427 0.50 +0.3
96,583 - 10795 mRNA_2427 0.51 +2.2
96,583 + 10795 mRNA_2427 0.51 -0.5
96,584 + 10795 mRNA_2427 0.51 -1.7
96,586 + 10795 mRNA_2427 0.51 -1.2
96,634 + 10795 mRNA_2427 0.58 +1.6
96,691 - 10795 mRNA_2427 0.67 +0.1

Or see this region's nucleotide sequence