Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2430

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10797 and 10798 are separated by 675 nucleotides10798 and 10799 are separated by 518 nucleotides mRNA_2429: 10797 - K03347 CUL1, CDC53 cullin 1, at 102,257 to 105,935 10797 mRNA_2430: 10798 - K09467 MIG zinc-finger protein CreA/MIG, at 106,611 to 109,400 10798 mRNA_2431: 10799 - Hypothetical Protein, at 109,919 to 110,380 10799

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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105,976 - -1.4
105,999 - +0.3
106,213 + +0.6
106,791 + +1.0
106,848 + +0.2
106,850 - +0.6
106,925 - 10798 mRNA_2430 0.11 +3.4
107,029 + 10798 mRNA_2430 0.15 +2.1
107,201 + 10798 mRNA_2430 0.21 +3.6
107,278 + 10798 mRNA_2430 0.24 +1.4
107,353 - 10798 mRNA_2430 0.27 +0.8
107,604 + 10798 mRNA_2430 0.36 +0.1
107,676 + 10798 mRNA_2430 0.38 +0.3
107,744 + 10798 mRNA_2430 0.41 +1.9
107,801 + 10798 mRNA_2430 0.43 +3.2
108,058 + 10798 mRNA_2430 0.52 +2.4
108,061 + 10798 mRNA_2430 0.52 +1.3
108,113 + 10798 mRNA_2430 0.54 +1.6
108,182 + 10798 mRNA_2430 0.56 +0.7
108,199 - 10798 mRNA_2430 0.57 +0.4
108,903 - 10798 mRNA_2430 0.82 -0.3
109,052 - 10798 mRNA_2430 0.87 -2.1
109,064 + 10798 mRNA_2430 0.88 -1.1
109,069 + 10798 mRNA_2430 0.88 -0.7
109,198 - +0.6
109,221 - +0.2
109,252 + +1.2
109,362 - -0.2
109,374 + +0.2
109,380 + -0.8
109,382 + -1.1
109,396 + -0.4
109,405 - +0.2
109,521 - +1.1
109,534 + +4.1
109,551 + +1.1
109,651 - +1.4
109,654 - -0.5
109,657 - -1.7
109,665 - +0.4
109,674 - +0.3
109,674 + +0.5
109,675 + -1.0
109,678 - +1.7
109,680 - +1.4
109,680 - -0.3
109,685 + -0.1
109,689 - +0.5
109,693 - +0.6
109,699 + +0.8
109,700 - +1.3
109,704 - +0.5
109,708 + -0.4
109,710 + -1.1
109,826 - -0.4
109,833 + +0.6
109,850 - +1.5
109,856 - +1.4
109,986 - 10799 mRNA_2431 0.15 +0.1
110,000 - 10799 mRNA_2431 0.18 +0.6
110,006 + 10799 mRNA_2431 0.19 -0.5
110,013 + 10799 mRNA_2431 0.20 +0.9
110,033 - 10799 mRNA_2431 0.25 +0.5
110,038 + 10799 mRNA_2431 0.26 +0.5
110,050 - 10799 mRNA_2431 0.28 -1.7
110,055 - 10799 mRNA_2431 0.29 +0.5
110,164 + 10799 mRNA_2431 0.53 -1.8

Or see this region's nucleotide sequence