Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2450

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10817 and 10818 are separated by 94 nucleotides10818 and 10819 are separated by 352 nucleotides mRNA_2449: 10817 - KOG1343 Histone deacetylase complex, catalytic component HDA1, at 159,950 to 161,445 10817 mRNA_2450: 10818 - KOG3037 Cell membrane glycoprotein, at 161,540 to 163,035 10818 mRNA_2451: 10819 - Hypothetical Protein, at 163,388 to 164,949 10819

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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161,173 + 10817 mRNA_2449 0.82 +0.1
161,281 - 10817 mRNA_2449 0.89 +1.3
161,434 + -0.0
161,465 + +0.5
161,905 + 10818 mRNA_2450 0.24 +0.1
162,014 + 10818 mRNA_2450 0.32 +1.0
162,272 + 10818 mRNA_2450 0.49 -0.8
162,291 - 10818 mRNA_2450 0.50 -1.3
162,602 + 10818 mRNA_2450 0.71 +1.3
162,604 - 10818 mRNA_2450 0.71 -0.4
162,724 - 10818 mRNA_2450 0.79 -1.1
162,862 - 10818 mRNA_2450 0.88 -2.4
162,891 + +0.1
162,902 - +1.0
162,919 + +0.4
163,053 + +0.1
163,063 - +1.4
163,063 - +1.4
163,067 - +1.7
163,077 - -0.2
163,484 + +0.5
163,518 + -0.3
163,686 + 10819 mRNA_2451 0.19 -0.2
163,985 + 10819 mRNA_2451 0.38 -1.9

Or see this region's nucleotide sequence