Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2466

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10833 and 10834 are separated by 450 nucleotides mRNA_2465: 10833 - K09291 TPR, MLP1, MLP2 nucleoprotein TPR, at 206,394 to 209,572 10833 mRNA_2466: 10834 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 210,023 to 215,249 10834

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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209,625 + -0.4
209,626 - +0.0
209,634 - -0.6
209,646 - +1.4
209,654 + +0.0
209,655 - -0.4
209,696 - -1.7
209,697 + -1.1
209,734 + -0.4
210,049 + +0.3
210,106 - -0.8
210,146 + +0.5
210,257 - -0.7
210,373 - -1.8
210,407 + +0.4
210,417 + +1.2
210,554 - 10834 mRNA_2466 0.10 -0.6
210,578 + 10834 mRNA_2466 0.11 +0.6
210,670 + 10834 mRNA_2466 0.12 +1.1
211,024 - 10834 mRNA_2466 0.19 -1.0
211,168 - 10834 mRNA_2466 0.22 -0.1
211,252 + 10834 mRNA_2466 0.24 -0.2
211,425 + 10834 mRNA_2466 0.27 +1.6
211,478 - 10834 mRNA_2466 0.28 +0.1
211,696 + 10834 mRNA_2466 0.32 +0.5
212,009 + 10834 mRNA_2466 0.38 -0.1
212,146 - 10834 mRNA_2466 0.41 +1.7
212,195 + 10834 mRNA_2466 0.42 +0.1
212,229 - 10834 mRNA_2466 0.42 -1.2
212,539 - 10834 mRNA_2466 0.48 +1.3
212,620 + 10834 mRNA_2466 0.50 -0.3
212,843 - 10834 mRNA_2466 0.54 -0.4
212,857 + 10834 mRNA_2466 0.54 +3.1
212,910 - 10834 mRNA_2466 0.55 -0.1
212,911 + 10834 mRNA_2466 0.55 -0.1
212,912 - 10834 mRNA_2466 0.55 +0.2
212,913 - 10834 mRNA_2466 0.55 -0.3
213,019 + 10834 mRNA_2466 0.57 +0.4
213,074 + 10834 mRNA_2466 0.58 +0.6
213,482 + 10834 mRNA_2466 0.66 +2.6
213,484 + 10834 mRNA_2466 0.66 +0.4
213,648 + 10834 mRNA_2466 0.69 -0.4
213,899 + 10834 mRNA_2466 0.74 +0.1
214,195 + 10834 mRNA_2466 0.80 +0.1
214,334 + 10834 mRNA_2466 0.82 -0.5
214,479 + 10834 mRNA_2466 0.85 +0.3
214,496 - 10834 mRNA_2466 0.86 +1.3
214,896 + +0.9
214,913 + -0.0
215,195 - +1.6
215,204 - +0.0
215,220 + -0.0
215,223 + -0.8
215,245 - +2.1
215,260 + -0.3
215,348 - +0.3
215,375 + -0.9
215,507 - +0.1
215,511 - +2.4
215,542 - -0.4
215,638 - -0.2
215,662 + -0.9
215,668 - +0.2
216,081 + -1.8
216,117 - +1.0
216,141 - +0.1
216,168 + -0.2

Or see this region's nucleotide sequence