Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2483

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10850 and 10851 are separated by 146 nucleotides10851 and 10852 are separated by 239 nucleotides mRNA_2482: 10850 - KOG0712 Molecular chaperone (DnaJ superfamily), at 252,498 to 254,224 10850 mRNA_2483: 10851 - K17541 SCYL2 SCY1-like protein 2, at 254,371 to 257,459 10851 mRNA_2484: 10852 - K11498 CENPE centromeric protein E, at 257,699 to 260,992 10852

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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253,402 - 10850 mRNA_2482 0.52 -0.3
253,412 + 10850 mRNA_2482 0.53 -2.0
253,430 + 10850 mRNA_2482 0.54 -0.3
253,557 - 10850 mRNA_2482 0.61 +0.8
253,684 + 10850 mRNA_2482 0.69 -2.0
253,859 - 10850 mRNA_2482 0.79 -0.9
253,981 - 10850 mRNA_2482 0.86 -0.2
253,986 + 10850 mRNA_2482 0.86 +0.4
253,986 + 10850 mRNA_2482 0.86 -0.4
253,994 - 10850 mRNA_2482 0.87 -0.4
254,036 + 10850 mRNA_2482 0.89 -0.7
254,147 - +0.4
254,149 - -0.3
254,303 + +1.3
254,307 + +0.2
254,318 - +0.1
254,458 - -0.1
254,715 - 10851 mRNA_2483 0.11 -0.5
254,721 - 10851 mRNA_2483 0.11 -1.0
254,742 - 10851 mRNA_2483 0.12 +0.3
254,751 + 10851 mRNA_2483 0.12 -0.6
254,871 + 10851 mRNA_2483 0.16 +1.4
255,057 - 10851 mRNA_2483 0.22 -1.0
255,058 + 10851 mRNA_2483 0.22 -0.4
255,316 - 10851 mRNA_2483 0.31 -1.3
255,467 - 10851 mRNA_2483 0.35 -0.7
255,570 + 10851 mRNA_2483 0.39 +0.4
255,576 + 10851 mRNA_2483 0.39 +0.2
255,651 + 10851 mRNA_2483 0.41 -1.0
255,916 - 10851 mRNA_2483 0.50 -1.0
256,042 + 10851 mRNA_2483 0.54 -0.8
256,396 + 10851 mRNA_2483 0.66 +1.8
256,984 + 10851 mRNA_2483 0.85 -0.5
257,231 - -0.4
257,233 + +0.4
257,525 + +0.7
257,831 - -0.2
257,935 + +0.4
257,937 - +2.1
258,018 + -0.1

Or see this region's nucleotide sequence