Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2514

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10882 and 10883 are separated by 296 nucleotides mRNA_2514: 10882 - Hypothetical Protein, at 330,199 to 330,672 10882 mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330,969 to 334,313 10883

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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329,280 - -0.7
329,304 - -2.4
329,307 + -1.5
329,403 + +0.5
329,408 - -0.7
329,565 - -0.1
329,829 - -1.1
329,983 - -2.7
330,024 + +2.2
330,026 + -3.2
330,238 + -1.8
330,404 + 10882 mRNA_2514 0.43 -0.6
330,459 - 10882 mRNA_2514 0.55 +0.7
330,591 - 10882 mRNA_2514 0.83 -1.4
330,605 + 10882 mRNA_2514 0.86 +0.4
330,608 + 10882 mRNA_2514 0.86 +0.4
330,647 - +2.4
330,647 - +0.5
330,741 - -0.0
330,751 - +0.1
330,764 + -0.3
330,787 - +0.3
330,793 - +0.4
330,794 + +0.2
330,794 + +1.0
330,797 - +1.0
330,920 + +0.3
330,924 + +0.7
330,925 + -0.6

Or see this region's nucleotide sequence