Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2549

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10916 and 10917 are separated by 110 nucleotides10917 and 10918 are separated by 210 nucleotides mRNA_2548: 10916 - KOG1943 Beta-tubulin folding cofactor D, at 419,199 to 423,600 10916 mRNA_2549: 10917 - HMMPfam-Chromatin modification-related protein EAF7-PF07904, at 423,711 to 424,964 10917 mRNA_2550: 10918 - KOG3116 Predicted C3H1-type Zn-finger protein, at 425,175 to 426,192 10918

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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422,756 + 10916 mRNA_2548 0.81 +1.7
422,883 - 10916 mRNA_2548 0.84 -0.4
423,269 - -0.2
423,297 + +1.4
423,359 - +0.4
423,382 - +0.9
423,456 + -0.8
424,147 - 10917 mRNA_2549 0.35 +0.9
424,308 + 10917 mRNA_2549 0.48 +0.7
424,972 + -0.7
424,993 + -0.1
424,995 - +1.1
425,023 - -0.6
425,284 - 10918 mRNA_2550 0.11 +0.9
425,287 - 10918 mRNA_2550 0.11 -0.7
425,296 + 10918 mRNA_2550 0.12 -1.9
425,438 - 10918 mRNA_2550 0.26 -0.9
425,440 - 10918 mRNA_2550 0.26 -0.4
425,720 - 10918 mRNA_2550 0.54 +0.7
425,726 + 10918 mRNA_2550 0.54 +0.7

Or see this region's nucleotide sequence