Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2557

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10924 and 10925 are separated by 289 nucleotides10925 and 10926 are separated by 163 nucleotides mRNA_2556: 10924 - Hypothetical Protein, at 435,593 to 437,275 10924 mRNA_2557: 10925 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 437,565 to 439,347 10925 mRNA_2558: 10926 - KOG3183 Predicted Zn-finger protein, at 439,511 to 440,693 10926

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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436,575 - 10924 mRNA_2556 0.58 +0.6
436,757 - 10924 mRNA_2556 0.69 -0.9
437,054 - 10924 mRNA_2556 0.87 -0.1
437,175 + +0.7
437,449 + -0.2
437,521 + -0.9
438,247 - 10925 mRNA_2557 0.38 +0.3
438,247 - 10925 mRNA_2557 0.38 +0.4
438,253 + 10925 mRNA_2557 0.39 -1.2
438,253 + 10925 mRNA_2557 0.39 -1.7
438,253 - 10925 mRNA_2557 0.39 +0.5
438,319 - 10925 mRNA_2557 0.42 +0.0
438,575 - 10925 mRNA_2557 0.57 +0.4
438,662 - 10925 mRNA_2557 0.62 +0.3
438,832 - 10925 mRNA_2557 0.71 -0.5
438,962 - 10925 mRNA_2557 0.78 -0.5
439,070 - 10925 mRNA_2557 0.84 +0.1
439,070 - 10925 mRNA_2557 0.84 +0.2
439,273 - +1.9
439,301 - +0.3
439,994 + 10926 mRNA_2558 0.41 +1.6
440,130 - 10926 mRNA_2558 0.52 +0.2

Or see this region's nucleotide sequence