Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2563

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10930 and 10931 are separated by 273 nucleotides10931 and 10932 are separated by 443 nucleotides mRNA_2562: 10930 - Hypothetical Protein, at 452,219 to 453,821 10930 mRNA_2563: 10931 - Interpro F-box-like, at 454,095 to 455,181 10931 mRNA_2564: 10932 - SUPERFAMILY--SSF52058, at 455,625 to 456,615 10932

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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453,102 - 10930 mRNA_2562 0.55 +2.3
453,267 - 10930 mRNA_2562 0.65 +0.2
453,277 + 10930 mRNA_2562 0.66 -0.9
453,284 - 10930 mRNA_2562 0.66 +0.5
453,453 - 10930 mRNA_2562 0.77 +0.5
453,456 + 10930 mRNA_2562 0.77 -0.3
453,579 + 10930 mRNA_2562 0.85 -0.1
453,724 + +0.0
453,745 + -0.2
453,886 - +0.2
454,141 + +0.3
454,170 + +1.2
454,174 + +0.8
454,287 + 10931 mRNA_2563 0.18 -1.5
454,432 - 10931 mRNA_2563 0.31 -0.4
454,477 - 10931 mRNA_2563 0.35 -0.5
454,585 + 10931 mRNA_2563 0.45 +0.4
454,635 - 10931 mRNA_2563 0.50 -1.4
455,084 + +0.4
455,318 - +0.7
455,493 - -2.1
455,518 + -0.5
455,622 - -0.3
455,780 + 10932 mRNA_2564 0.16 -0.8
456,085 - 10932 mRNA_2564 0.46 -1.2

Or see this region's nucleotide sequence