Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2614

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10981 and 10982 are separated by 571 nucleotides10982 and 10983 are separated by 935 nucleotides mRNA_2613: 10981 - K00223 ERG4 Delta24(24(1))-sterol reductase, at 594,980 to 596,945 10981 mRNA_2614: 10982 - K18050 PRKCE novel protein kinase C epsilon type, at 597,517 to 601,558 10982 mRNA_2615: 10983 - K14775 UTP30, RSL1D1 ribosome biogenesis protein UTP30, at 602,494 to 603,879 10983

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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596,992 - +0.9
597,003 - +0.1
597,050 - -0.9
597,285 + +0.1
597,287 + -1.8
597,291 - +0.3
597,293 - -1.6
597,299 - +0.5
597,302 - -1.0
597,317 - -0.5
597,447 + +0.5
597,475 + +0.4
597,838 - -1.9
598,159 + 10982 mRNA_2614 0.16 -1.1
602,193 + -0.5
602,196 + +1.6
602,291 + -0.6
602,334 - -1.8
602,344 - +1.1
602,377 - +0.9

Or see this region's nucleotide sequence