Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2623

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10990 and 10991 are separated by 310 nucleotides10991 and 10992 are separated by 93 nucleotides mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613,719 to 614,794 10990 mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615,105 to 616,887 10991 mRNA_2624: 10992 - SUPERFAMILY--SSF52058, at 616,981 to 618,073 10992

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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614,539 - 10990 mRNA_2622 0.76 -0.1
614,679 - 10990 mRNA_2622 0.89 -0.6
614,828 + -0.9
614,845 + +0.4
614,968 - +0.9
615,035 + +0.2
615,040 + +1.3
615,141 + +2.2
615,147 - +1.1
615,158 + +1.0
615,160 - +1.0
615,166 - +1.6
615,174 + +0.3
615,313 - 10991 mRNA_2623 0.12 +1.6
615,351 + 10991 mRNA_2623 0.14 -0.7
615,470 + 10991 mRNA_2623 0.20 -2.2
615,479 - 10991 mRNA_2623 0.21 -0.3
615,739 - 10991 mRNA_2623 0.36 +1.0
615,764 + 10991 mRNA_2623 0.37 +0.0
615,766 + 10991 mRNA_2623 0.37 -0.3
615,842 - 10991 mRNA_2623 0.41 -1.2
616,188 - 10991 mRNA_2623 0.61 +1.6
616,461 - 10991 mRNA_2623 0.76 -2.1
616,762 + +0.5
616,776 - +1.7
617,039 + +0.3
617,046 - -1.4
617,102 - 10992 mRNA_2624 0.11 +0.3
617,180 - 10992 mRNA_2624 0.18 +1.3
617,190 + 10992 mRNA_2624 0.19 +0.0
617,355 - 10992 mRNA_2624 0.34 +0.2
617,361 + 10992 mRNA_2624 0.35 +0.8
617,378 - 10992 mRNA_2624 0.36 -0.6
617,504 + 10992 mRNA_2624 0.48 +0.7
617,505 - 10992 mRNA_2624 0.48 +0.9
617,645 - 10992 mRNA_2624 0.61 -0.6
617,725 - 10992 mRNA_2624 0.68 -1.1
617,726 + 10992 mRNA_2624 0.68 +0.8
617,738 + 10992 mRNA_2624 0.69 +0.3
617,751 - 10992 mRNA_2624 0.70 +0.1
617,759 - 10992 mRNA_2624 0.71 +0.7
617,760 - 10992 mRNA_2624 0.71 -0.7
617,762 + 10992 mRNA_2624 0.71 -0.2
617,770 + 10992 mRNA_2624 0.72 +0.1
617,771 + 10992 mRNA_2624 0.72 +0.1
617,771 + 10992 mRNA_2624 0.72 -0.1
617,780 - 10992 mRNA_2624 0.73 +0.7
617,784 + 10992 mRNA_2624 0.73 +1.3
617,786 - 10992 mRNA_2624 0.74 +0.0
617,788 - 10992 mRNA_2624 0.74 +0.2
617,805 - 10992 mRNA_2624 0.75 -0.1
617,826 + 10992 mRNA_2624 0.77 -0.0
617,844 - 10992 mRNA_2624 0.79 +1.3
617,847 + 10992 mRNA_2624 0.79 -2.4
617,884 + 10992 mRNA_2624 0.83 +0.2
617,885 - 10992 mRNA_2624 0.83 -0.7

Or see this region's nucleotide sequence