Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2647

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11014 and 11015 are separated by 439 nucleotides11015 and 11016 are separated by 315 nucleotides mRNA_2646: 11014 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058, at 667,019 to 668,057 11014 mRNA_2647: 11015 - Hypothetical Protein, at 668,497 to 669,102 11015 mRNA_2648: 11016 - SUPERFAMILY--SSF52058, at 669,418 to 670,426 11016

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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667,604 + 11014 mRNA_2646 0.56 +0.2
667,673 - 11014 mRNA_2646 0.63 -1.5
667,963 + -1.2
668,352 + +0.5
668,538 + -0.6
668,945 - 11015 mRNA_2647 0.74 -0.5
669,110 + +0.8
669,158 - -0.7
669,166 + +0.1
669,289 - +0.1
669,306 + -0.6
669,447 + +0.8
669,594 + 11016 mRNA_2648 0.17 -0.8
669,614 - 11016 mRNA_2648 0.19 -1.1
669,866 + 11016 mRNA_2648 0.44 -0.7
669,876 - 11016 mRNA_2648 0.45 +0.7
669,877 - 11016 mRNA_2648 0.45 -0.5
669,878 + 11016 mRNA_2648 0.46 -2.1
669,881 - 11016 mRNA_2648 0.46 +0.1
669,985 + 11016 mRNA_2648 0.56 +0.4

Or see this region's nucleotide sequence