Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2663

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11030 and 11031 are separated by 525 nucleotides11031 and 11032 are separated by 752 nucleotides mRNA_2662: 11030 - Interpro Bacterial protein of unknown function (HtrL_YibB), at 705,643 to 707,120 11030 mRNA_2663: 11031 - Hypothetical Protein, at 707,646 to 708,293 11031 mRNA_2664: 11032 - Hypothetical Protein, at 709,046 to 711,250 11032

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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706,917 + 11030 mRNA_2662 0.86 -1.6
707,047 - -0.5
707,061 - -0.8
707,184 + -0.4
707,203 - +0.2
707,206 - -1.0
707,233 - -0.3
707,311 - +0.6
707,321 + -2.5
707,331 - +1.1
707,346 + -0.6
707,382 + -0.3
707,590 - -0.1
707,657 + -0.7
708,170 - 11031 mRNA_2663 0.81 +1.4
708,225 + 11031 mRNA_2663 0.89 +0.1
708,232 - -0.1
708,681 + -2.0
708,788 + +0.4
708,823 - -0.3
708,836 + +0.1
708,843 + +0.2
708,867 + +0.8
709,284 - 11032 mRNA_2664 0.11 -0.5

Or see this region's nucleotide sequence