Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2665

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11033 and 11034 are separated by 357 nucleotides mRNA_2665: 11033 - HMMPfam-Protein of unknown function (DUF3431)-PF11913, at 712,409 to 714,651 11033 mRNA_2666: 11034 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 715,009 to 717,266 11034

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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711,440 - -0.3
711,444 + -0.4
711,473 + +0.7
711,483 - +0.7
711,483 - +0.5
711,484 + +0.9
711,486 + +0.5
711,487 - -0.9
711,495 + +0.9
711,496 + +1.0
711,500 - +2.5
711,501 - +0.8
711,505 + -1.2
711,505 + -1.4
711,507 - -0.3
711,510 - -0.3
711,520 - +1.3
711,537 + +0.4
711,541 + +0.2
711,592 + -0.5
711,605 + +0.4
711,610 - -1.3
711,623 - +1.7
711,624 - +1.4
711,631 + +0.2
711,645 + +0.4
711,655 + +0.4
711,695 + +0.9
711,734 - +2.0
711,759 + +0.9
711,770 - -1.2
711,775 - +0.2
711,775 - +1.1
711,776 + +0.9
711,779 + +1.9
711,791 + +0.3
711,801 + +0.4
711,801 - -1.3
711,803 + +0.8
711,849 - -0.0
711,922 - -1.2
712,181 - +0.2
712,205 + -1.3
712,223 - -1.6
712,301 - -1.7
712,316 + +0.8
712,338 + +0.3
712,354 - +0.3
712,362 - +2.1
712,649 - 11033 mRNA_2665 0.11 +0.0
712,660 + 11033 mRNA_2665 0.11 -0.7
712,765 - 11033 mRNA_2665 0.16 +1.7
713,671 + 11033 mRNA_2665 0.56 +0.9
713,673 + 11033 mRNA_2665 0.56 +1.0
713,826 - 11033 mRNA_2665 0.63 +0.3
714,658 + -1.7
714,969 + +1.4

Or see this region's nucleotide sequence