Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2670

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11037 and 11038 are separated by 338 nucleotides11038 and 11039 are separated by 952 nucleotides mRNA_2669: 11037 - Hypothetical Protein, at 722,649 to 723,844 11037 mRNA_2670: 11038 - SUPERFAMILY--SSF52058, at 724,183 to 725,340 11038 mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726,293 to 729,723 11039

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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723,423 - 11037 mRNA_2669 0.65 +0.4
723,524 - 11037 mRNA_2669 0.73 -0.3
723,566 - 11037 mRNA_2669 0.77 -0.2
723,572 + 11037 mRNA_2669 0.77 +0.8
723,587 + 11037 mRNA_2669 0.78 +0.3
723,674 + 11037 mRNA_2669 0.86 -0.6
723,718 - 11037 mRNA_2669 0.89 -0.9
723,729 + -2.0
723,744 + +0.3
723,868 + -1.1
723,882 - +0.3
723,882 - -0.4
723,886 - +0.1
723,886 - -0.0
724,086 + -0.2
724,089 + +0.8
724,220 - +0.8
724,229 + +1.2
724,230 + +1.6
724,683 + 11038 mRNA_2670 0.43 +0.5
724,791 + 11038 mRNA_2670 0.53 -1.9
725,372 + -0.5
725,398 + -0.2
725,400 + +1.1
725,457 - +0.2
725,590 + -0.3
725,602 + +0.3
725,745 - -0.2
725,753 + -0.5
725,765 - -1.5
725,773 + +0.5
725,774 - +1.2
725,783 + +0.8
725,800 + -0.2
725,807 + -1.6
725,814 - +1.1
725,843 - -0.7
725,879 + -0.6
725,879 + +0.7
726,006 + -1.2
726,029 + +0.1
726,045 + -0.0
726,203 + +1.1

Or see this region's nucleotide sequence