Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2681

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11048 and 11049 are separated by 710 nucleotides11049 and 11050 are separated by 996 nucleotides mRNA_2680: 11048 - Hypothetical Protein, at 764,065 to 765,232 11048 mRNA_2681: 11049 - Hypothetical Protein, at 765,943 to 766,697 11049 mRNA_2682: 11050 - K00589 MET1 uroporphyrin-III C-methyltransferase, at 767,694 to 769,770 11050

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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764,999 - 11048 mRNA_2680 0.80 +0.3
765,144 - +0.6
765,163 - +2.3
765,280 - +0.4
765,885 - -0.8
765,919 + +2.3
765,972 - -0.4
766,281 + 11049 mRNA_2681 0.45 -0.2
766,461 - 11049 mRNA_2681 0.69 +0.1
767,204 + +0.6
767,220 + -0.2
767,234 + +1.1
767,451 - +1.6
767,471 - +1.2
767,471 + -0.7
767,556 + +0.6
767,578 + +0.0

Or see this region's nucleotide sequence