Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11054 and 11055 are separated by 595 nucleotides mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3,087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
1 + +2.0
28 + +0.3
28 + +1.0
37 + +0.7
37 + +0.2
38 + -0.9
44 + -0.1
48 - +1.0
49 + -0.9
49 + +1.6
49 + -0.9
49 + -1.4
49 + -1.1
49 + -0.4
49 - +0.7
52 + -3.6
54 - -2.0
54 - +0.2
58 + -2.1
62 + +0.4
70 - +0.1
73 + +0.5
74 - +1.3
74 + -2.1
112 - +0.3
120 - -0.4
138 + +0.4
142 + -0.3
142 + +0.1
142 + +0.8
144 + +0.0
145 - +0.2
147 + -1.6
152 + -2.2
159 + -2.8
159 - -0.0
163 + +2.3
169 - +0.7
170 + -0.2
171 - -1.5
173 + +0.1
175 - -0.5
176 + -1.2
177 + -0.9
183 + -0.8
193 + -0.7
205 + -1.0
231 + +1.1
232 + -0.4
235 - -2.3
252 - +0.4
259 + -0.6
259 + +0.4
259 + +0.2
262 - +1.3
269 + -1.3
273 + +1.1
275 - +0.1
289 + +0.1
299 + +1.2
312 - -0.9
339 + -0.7
352 + -0.9
357 + -1.8
358 + +1.6
368 - -2.5
417 - -0.2
429 + +0.1
434 + +0.5
445 + +1.2
462 + -2.6
462 + -1.9
502 + -1.7
529 - +0.1
540 - +1.7
561 + +2.0
584 + +0.3
584 - +0.7
584 + -1.4
633 + +0.8
636 + -1.0
646 + +0.8
703 - -1.0
736 - +0.1
772 - 11054 mRNA_2686 0.10 -1.6
845 - 11054 mRNA_2686 0.13 +0.3
871 + 11054 mRNA_2686 0.14 +2.3
911 + 11054 mRNA_2686 0.16 +1.6
919 - 11054 mRNA_2686 0.16 +0.6
922 + 11054 mRNA_2686 0.16 -0.2
937 - 11054 mRNA_2686 0.17 +1.7
946 - 11054 mRNA_2686 0.17 +1.3
1,039 + 11054 mRNA_2686 0.21 -1.8
1,042 - 11054 mRNA_2686 0.21 +1.0
1,056 + 11054 mRNA_2686 0.21 +0.7
1,056 + 11054 mRNA_2686 0.21 +1.4
1,059 - 11054 mRNA_2686 0.21 -1.0
1,059 - 11054 mRNA_2686 0.21 +0.6
1,079 + 11054 mRNA_2686 0.22 +1.3
1,089 + 11054 mRNA_2686 0.22 +0.3
1,090 - 11054 mRNA_2686 0.22 -0.0
1,099 - 11054 mRNA_2686 0.23 -0.1
1,116 - 11054 mRNA_2686 0.24 -0.5
1,219 - 11054 mRNA_2686 0.28 +1.6
1,230 + 11054 mRNA_2686 0.28 +0.4
1,258 - 11054 mRNA_2686 0.29 +0.1
1,270 - 11054 mRNA_2686 0.29 +2.1
1,272 + 11054 mRNA_2686 0.30 -0.1
1,324 + 11054 mRNA_2686 0.32 -0.7
1,351 + 11054 mRNA_2686 0.33 +1.3
1,464 + 11054 mRNA_2686 0.37 -0.5
1,508 + 11054 mRNA_2686 0.39 +0.2
1,514 - 11054 mRNA_2686 0.39 -1.5
1,611 + 11054 mRNA_2686 0.43 -0.3
1,642 + 11054 mRNA_2686 0.44 +1.0
1,671 + 11054 mRNA_2686 0.45 +1.1
1,680 + 11054 mRNA_2686 0.45 -0.7
1,683 - 11054 mRNA_2686 0.46 +1.6
1,684 + 11054 mRNA_2686 0.46 -1.7
1,699 + 11054 mRNA_2686 0.46 +2.0
1,836 + 11054 mRNA_2686 0.51 -1.7
1,912 + 11054 mRNA_2686 0.54 -0.9
1,961 - 11054 mRNA_2686 0.56 -1.3
2,068 - 11054 mRNA_2686 0.60 +2.2
2,071 - 11054 mRNA_2686 0.61 -0.1
2,079 + 11054 mRNA_2686 0.61 -0.7
2,096 - 11054 mRNA_2686 0.62 -0.9
2,112 + 11054 mRNA_2686 0.62 -0.9
2,128 + 11054 mRNA_2686 0.63 -1.2
2,140 + 11054 mRNA_2686 0.63 -1.6
2,141 - 11054 mRNA_2686 0.63 +0.9
2,158 + 11054 mRNA_2686 0.64 -2.9
2,196 + 11054 mRNA_2686 0.65 -0.2
2,238 + 11054 mRNA_2686 0.67 -1.3
2,250 - 11054 mRNA_2686 0.67 -0.9
2,271 + 11054 mRNA_2686 0.68 +1.8
2,404 - 11054 mRNA_2686 0.73 -0.7
2,419 + 11054 mRNA_2686 0.74 +2.1
2,442 - 11054 mRNA_2686 0.75 -0.2
2,444 - 11054 mRNA_2686 0.75 +0.3
2,534 - 11054 mRNA_2686 0.79 -1.5
2,547 - 11054 mRNA_2686 0.79 -3.2
2,564 + 11054 mRNA_2686 0.80 +0.7
2,685 - 11054 mRNA_2686 0.84 -0.3
2,806 + 11054 mRNA_2686 0.89 +1.4
2,806 - 11054 mRNA_2686 0.89 +0.8
2,814 - 11054 mRNA_2686 0.89 +1.1
2,938 + -0.0
2,971 + -2.5
2,984 - +0.8
3,056 - -1.0
3,090 + -2.1
3,127 + -3.3
3,135 - +0.3
3,141 + +0.7
3,282 + -0.4
3,380 + +0.6
3,409 - -0.0

Or see this region's nucleotide sequence