Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2690

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11058 and 11059 are separated by 964 nucleotides mRNA_2690: 11058 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 13,747 to 14,595 11058 mRNA_2691: 11059 - Hypothetical Protein, at 15,560 to 16,423 11059

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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12,895 + -1.7
13,053 - +1.3
13,057 - +2.1
13,068 + +1.2
13,229 + -0.3
13,313 + +0.9
13,470 - -0.9
13,480 - +0.8
13,480 - -1.4
13,497 - +1.3
13,499 - -0.1
13,503 - +0.4
13,509 - -1.7
13,510 + +0.7
13,517 + +0.9
13,522 + +2.6
13,522 + +0.3
13,661 - -0.4
13,810 - -0.4
13,834 + 11058 mRNA_2690 0.10 -1.2
13,943 - 11058 mRNA_2690 0.23 -2.2
13,949 + 11058 mRNA_2690 0.24 -0.1
13,952 + 11058 mRNA_2690 0.24 -0.6
13,958 + 11058 mRNA_2690 0.25 -1.9
13,960 - 11058 mRNA_2690 0.25 +1.9
13,963 + 11058 mRNA_2690 0.25 -1.7
13,967 + 11058 mRNA_2690 0.26 +1.6
13,971 - 11058 mRNA_2690 0.26 -0.5
13,984 - 11058 mRNA_2690 0.28 -0.7
13,994 + 11058 mRNA_2690 0.29 -1.0
14,085 - 11058 mRNA_2690 0.40 -1.5
14,089 + 11058 mRNA_2690 0.40 +1.1
14,095 - 11058 mRNA_2690 0.41 -1.6
14,111 - 11058 mRNA_2690 0.43 +0.2
14,133 + 11058 mRNA_2690 0.45 -0.0
14,168 + 11058 mRNA_2690 0.50 -0.1
14,168 + 11058 mRNA_2690 0.50 -0.4
14,168 - 11058 mRNA_2690 0.50 +0.4
14,246 - 11058 mRNA_2690 0.59 -0.8
14,250 + 11058 mRNA_2690 0.59 +1.6
14,267 + 11058 mRNA_2690 0.61 -0.1
14,268 - 11058 mRNA_2690 0.61 +1.2
14,283 - 11058 mRNA_2690 0.63 -0.6
14,283 + 11058 mRNA_2690 0.63 -1.9
14,283 + 11058 mRNA_2690 0.63 +0.7
14,285 - 11058 mRNA_2690 0.63 -0.2
14,287 - 11058 mRNA_2690 0.64 +0.2
14,291 + 11058 mRNA_2690 0.64 +3.6
14,318 - 11058 mRNA_2690 0.67 -0.2
14,323 - 11058 mRNA_2690 0.68 +1.1
14,329 - 11058 mRNA_2690 0.69 -0.6
14,331 - 11058 mRNA_2690 0.69 -0.2
14,338 - 11058 mRNA_2690 0.70 -0.9
14,342 - 11058 mRNA_2690 0.70 -0.6
14,346 - 11058 mRNA_2690 0.71 -2.1
14,353 + 11058 mRNA_2690 0.71 -0.2
14,355 - 11058 mRNA_2690 0.72 -0.5
14,356 - 11058 mRNA_2690 0.72 +0.9
14,357 + 11058 mRNA_2690 0.72 +0.3
14,360 - 11058 mRNA_2690 0.72 +1.7
14,361 - 11058 mRNA_2690 0.72 +2.0
14,366 + 11058 mRNA_2690 0.73 -0.6
14,368 - 11058 mRNA_2690 0.73 +0.9
14,368 + 11058 mRNA_2690 0.73 +0.5
14,374 - 11058 mRNA_2690 0.74 -1.0
14,376 - 11058 mRNA_2690 0.74 +0.0
14,380 + 11058 mRNA_2690 0.75 +0.3
14,382 - 11058 mRNA_2690 0.75 +0.0
14,398 - 11058 mRNA_2690 0.77 -0.0
14,401 - 11058 mRNA_2690 0.77 +0.3
14,401 - 11058 mRNA_2690 0.77 +0.0
14,403 - 11058 mRNA_2690 0.77 +0.1
14,408 - 11058 mRNA_2690 0.78 +1.2
14,409 - 11058 mRNA_2690 0.78 +1.9
14,411 + 11058 mRNA_2690 0.78 +1.5
14,411 - 11058 mRNA_2690 0.78 -1.5
14,413 + 11058 mRNA_2690 0.78 +0.1
14,416 - 11058 mRNA_2690 0.79 +1.6
14,416 + 11058 mRNA_2690 0.79 -0.0
14,421 + 11058 mRNA_2690 0.79 -0.2
14,425 - 11058 mRNA_2690 0.80 +1.0
14,427 + 11058 mRNA_2690 0.80 +0.6
14,428 + 11058 mRNA_2690 0.80 +0.7
14,430 + 11058 mRNA_2690 0.80 +1.2
14,440 - 11058 mRNA_2690 0.82 +0.2
14,456 - 11058 mRNA_2690 0.84 -0.1
14,466 + 11058 mRNA_2690 0.85 -0.4
14,539 - -0.0
14,545 - -0.8
14,550 + +3.7
14,551 - +2.0
14,552 + -0.6
14,552 + -0.8
14,552 + -2.2
14,561 + -0.4
14,567 - +0.2
14,567 - -2.2
14,570 + +0.7
14,571 - +0.4
14,571 - -0.7
14,572 + +0.6
14,572 + -1.2
14,573 + +4.1
14,576 + -1.6
14,576 - +0.1
14,579 + +1.9
14,582 - -0.7
14,587 + -0.4
14,588 + +1.4
14,590 - +1.4
14,592 + +0.4
14,612 - +1.7
14,628 + +1.9
14,634 + -0.0
14,636 - +2.2
14,654 + +0.1
14,656 - +0.1
14,662 + +0.5
14,662 - +0.4
14,669 + -1.5
14,675 + +1.5
14,675 + +0.1
14,676 - +0.3
14,701 - -0.4
14,718 - +0.4
14,727 - -0.5
14,729 + +0.8
14,745 + -0.1
14,763 - +1.7
14,770 + -0.2
14,787 + +1.4
14,800 - -0.1
14,805 + +0.5
14,828 + +1.6
14,828 + -0.2
14,832 - +0.8
14,833 - -0.6
14,850 - +1.0
14,922 - +1.5
14,929 + -0.4
14,932 + +1.4
14,954 - +2.2
14,958 - -0.3
14,959 + +0.5
14,968 + +0.5
14,972 + -0.6
14,975 + -0.1
14,976 + +0.4
14,982 - +0.7
14,983 - -0.1
14,983 + -1.3
14,986 - +0.3
14,992 + -0.3
14,999 + +0.5
15,002 - +1.2
15,015 - +0.1
15,043 + -0.0
15,048 - +0.0
15,048 - +1.2
15,048 - +1.7
15,049 - -0.3
15,053 - +1.6
15,054 + -0.2
15,054 - +0.1
15,056 - +1.1
15,066 + +0.6
15,071 + -0.8
15,073 + +0.4
15,077 - +0.1
15,097 - -0.1
15,104 + +0.2
15,161 + -0.1
15,162 - +0.2
15,174 - +1.8
15,197 + +0.2
15,206 - +1.7
15,208 - +0.2
15,211 - +0.4
15,230 + -0.9
15,241 + -0.0
15,247 - +0.7
15,248 - +0.9
15,254 + -0.4
15,255 + +2.1
15,255 + +0.4
15,258 - +0.3
15,260 + +0.1
15,266 - -0.1
15,269 + -0.3
15,272 + -0.0
15,276 - -0.8
15,280 - -1.4
15,286 - -0.3
15,288 - -0.7
15,320 - -1.2
15,333 - -0.2
15,335 - -0.5
15,367 - +0.5
15,381 + -1.1
15,385 - +0.4
15,405 - -0.6
15,413 + +0.5
15,426 + -0.5
15,444 + +0.6
15,476 + +0.4
15,520 - -1.0
15,520 - +0.5
15,552 - +0.3
15,555 + -0.3
15,557 + +0.2
15,561 + -1.4
15,562 - -0.9
15,563 - -0.8
15,570 + +1.4
15,576 - +0.5
15,576 - +1.2
15,579 - +0.2

Or see this region's nucleotide sequence