Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2731

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11097 and 11098 overlap by 2 nucleotides11098 and 11099 are separated by 10 nucleotides mRNA_2729: 11097 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 90,358 to 92,251 11097 mRNA_2730: 11098 - Hypothetical Protein, at 92,250 to 93,018 11098 mRNA_2731: 11099 - HMMPfam-Domain of unknown function (DUF4112)-PF13430, at 93,029 to 93,911 11099

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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92,091 - +0.2
92,205 + +0.7
92,383 - 11098 mRNA_2730 0.17 +0.4
92,385 - 11098 mRNA_2730 0.18 -0.4
92,402 + 11098 mRNA_2730 0.20 +0.1
92,504 + 11098 mRNA_2730 0.33 -1.1
92,524 - 11098 mRNA_2730 0.36 +0.5
92,661 - 11098 mRNA_2730 0.53 +0.2
92,671 - 11098 mRNA_2730 0.55 -0.6
92,672 - 11098 mRNA_2730 0.55 +2.0
92,674 + 11098 mRNA_2730 0.55 +0.3
92,675 - 11098 mRNA_2730 0.55 +1.2
92,687 - 11098 mRNA_2730 0.57 +0.1
92,691 - 11098 mRNA_2730 0.57 -1.4
92,691 - 11098 mRNA_2730 0.57 +0.3
92,695 + 11098 mRNA_2730 0.58 -0.6
92,695 + 11098 mRNA_2730 0.58 +0.2
92,697 + 11098 mRNA_2730 0.58 -0.6
92,697 + 11098 mRNA_2730 0.58 +0.7
92,706 + 11098 mRNA_2730 0.59 -0.1
92,709 - 11098 mRNA_2730 0.60 +0.7
92,712 - 11098 mRNA_2730 0.60 +1.4
92,715 + 11098 mRNA_2730 0.60 -3.6
92,715 + 11098 mRNA_2730 0.60 -0.9
92,716 - 11098 mRNA_2730 0.61 -2.1
92,716 + 11098 mRNA_2730 0.61 +1.0
92,716 + 11098 mRNA_2730 0.61 +0.3
92,716 - 11098 mRNA_2730 0.61 -0.2
92,727 + 11098 mRNA_2730 0.62 +0.1
92,731 - 11098 mRNA_2730 0.63 +0.0
92,732 + 11098 mRNA_2730 0.63 -0.3
92,733 + 11098 mRNA_2730 0.63 +0.3
92,785 - 11098 mRNA_2730 0.70 -1.0
92,826 - 11098 mRNA_2730 0.75 -0.0
92,834 - 11098 mRNA_2730 0.76 -0.6
92,841 + 11098 mRNA_2730 0.77 -1.2
92,843 - 11098 mRNA_2730 0.77 -0.3
92,862 + 11098 mRNA_2730 0.80 +0.9
92,961 + -1.1
92,980 - -0.3
92,983 - +0.5
93,115 - +1.9
94,127 + -1.2
94,283 - +0.7
94,330 + -0.7
94,445 + -0.6
94,462 - -0.1

Or see this region's nucleotide sequence