Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2739

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11106 and 11107 are separated by 418 nucleotides11107 and 11108 are separated by 892 nucleotides mRNA_2738: 11106 - K20121 FNBP1 formin-binding protein 1, at 107,722 to 109,356 11106 mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109,775 to 112,160 11107 mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113,053 to 114,206 11108

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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108,784 - 11106 mRNA_2738 0.65 +0.9
108,814 + 11106 mRNA_2738 0.67 +0.5
108,872 + 11106 mRNA_2738 0.70 +1.0
109,359 - +0.3
109,597 + -1.2
109,866 + +0.5
110,095 + 11107 mRNA_2739 0.13 -0.3
110,170 - 11107 mRNA_2739 0.17 +0.1
110,219 + 11107 mRNA_2739 0.19 +0.3
110,493 + 11107 mRNA_2739 0.30 +0.7
110,494 - 11107 mRNA_2739 0.30 +0.9
110,658 + 11107 mRNA_2739 0.37 +1.7
110,732 - 11107 mRNA_2739 0.40 -0.4
110,732 - 11107 mRNA_2739 0.40 -1.8
111,221 + 11107 mRNA_2739 0.61 -0.2
112,067 - -0.1
112,069 - -1.8
112,241 - +0.2
112,242 + +0.6
112,251 - -1.2
112,256 + -1.2
112,257 - +2.3
112,333 + -0.2
112,402 + +0.5
112,465 - -0.3
112,601 - +0.2
112,623 - +0.9
112,630 + -0.6
112,638 + +0.0
112,647 + +1.0
112,649 + +0.3
112,709 - -2.9
112,717 + +0.4
112,745 - +1.5
112,782 - +1.3
112,785 - +2.0
112,789 - +0.1
112,789 - +0.8
112,800 + -2.0
112,805 - +2.6
112,807 + +0.4
112,807 - -0.7
112,808 - -1.1
112,809 - +1.2
112,814 + +1.0
112,814 - -1.1
112,817 - +0.0
112,817 + -0.8
112,830 + +0.6
112,840 + -0.4
112,842 + +0.4
112,852 - +0.5
112,852 + +0.2
112,855 + -0.2
112,855 + +0.2
112,971 + +2.3
112,975 + -0.6
112,982 - -0.2
112,985 - +0.3
112,987 + -0.4
112,997 + +0.6
112,997 - -0.2
113,005 - +0.1
113,112 + -0.1
113,123 + -2.2
113,124 - -1.5
113,132 + +0.8
113,149 + +0.5

Or see this region's nucleotide sequence