Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2768

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11135 and 11136 are separated by 145 nucleotides11136 and 11137 are separated by 223 nucleotides mRNA_2767: 11135 - K10084 EDEM1 ER degradation enhancer, mannosidase alpha-like 1, at 166,551 to 170,333 11135 mRNA_2768: 11136 - K08681 pdxT, pdx2 5'-phosphate synthase pdxT subunit, at 170,479 to 171,341 11136 mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171,565 to 173,167 11137

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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169,766 - 11135 mRNA_2767 0.85 +0.8
169,779 + 11135 mRNA_2767 0.85 -0.5
169,810 - 11135 mRNA_2767 0.86 +0.3
170,517 - +1.5
170,669 - 11136 mRNA_2768 0.22 -0.4
170,811 - 11136 mRNA_2768 0.38 +0.3
170,952 + 11136 mRNA_2768 0.55 +0.2
170,988 + 11136 mRNA_2768 0.59 +0.3
171,119 - 11136 mRNA_2768 0.74 +1.0
171,267 - -0.2
171,300 + -0.1
171,440 - -0.6
171,444 - +0.7
171,478 + +1.3
171,644 + -0.5
171,646 + +0.5
171,647 - +1.8
171,669 - +1.4
171,778 + 11137 mRNA_2769 0.13 -0.8
171,787 - 11137 mRNA_2769 0.14 -0.0
171,920 - 11137 mRNA_2769 0.22 -0.3
171,928 + 11137 mRNA_2769 0.23 +0.2
172,075 + 11137 mRNA_2769 0.32 -0.9
172,216 + 11137 mRNA_2769 0.41 -0.8
172,216 - 11137 mRNA_2769 0.41 -1.1
172,217 + 11137 mRNA_2769 0.41 +0.5

Or see this region's nucleotide sequence