Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2779

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11146 and 11147 are separated by 129 nucleotides mRNA_2778: 11146 - K15264 NSUN5, WBSCR20 putative methyltransferase, at 188,984 to 191,295 11146 mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191,425 to 193,018 11147

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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190,735 + 11146 mRNA_2778 0.76 +1.1
190,941 - 11146 mRNA_2778 0.85 +0.2
190,942 + 11146 mRNA_2778 0.85 -0.1
190,964 - 11146 mRNA_2778 0.86 +2.4
190,970 + 11146 mRNA_2778 0.86 -0.0
191,153 - -0.1
191,153 + -0.6
191,161 + +0.5
191,319 + -0.7
191,320 - +0.2
191,348 - -0.1
191,430 - -0.8
191,441 - +0.5
191,552 + -1.4
191,580 - -0.7
191,763 + 11147 mRNA_2779 0.21 +1.5
191,794 + 11147 mRNA_2779 0.23 -0.8
192,023 - 11147 mRNA_2779 0.38 +0.4
192,129 + 11147 mRNA_2779 0.44 +0.0
192,420 + 11147 mRNA_2779 0.62 -0.6
192,733 - 11147 mRNA_2779 0.82 -0.5
192,852 - 11147 mRNA_2779 0.90 -0.0
192,990 + -0.6
192,990 + -0.4
192,995 - +0.6
193,008 + +1.5
193,018 - +1.7
193,021 + +0.4
193,052 + -1.0
193,120 + +0.3
193,253 + +0.6
193,285 - -0.1
193,308 + -1.2
193,309 - -0.8
193,310 - +0.3
193,318 + -0.9
193,321 - +0.3
193,330 + -0.8
193,383 - -1.3
193,384 + -0.7
193,391 + +0.5
193,397 - +0.7
193,397 - +0.5
193,404 + -1.9
193,414 - +0.9
193,435 - +0.7
193,462 - +2.0
193,478 - +0.1
193,480 - +0.6
193,489 - -1.2
193,522 - +0.2
193,529 + +0.5
193,543 + +0.8
193,563 + -1.0
193,573 - -0.1
193,578 + +0.3
193,578 + -1.2
193,582 + +0.1
193,600 + +0.7
193,615 - -2.2
193,621 + -1.6
193,622 + +0.7
193,623 + -0.8
193,703 + -0.2
193,745 + -0.6
193,749 + +0.1
193,875 - -0.1
193,900 + -0.2

Or see this region's nucleotide sequence