Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2784

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11152 and 11153 are separated by 406 nucleotides mRNA_2784: 11152 - K20241 WDR44, RAB11BP WD repeat-containing protein 44, at 204,617 to 208,124 11152 mRNA_2785: 11153 - ProSiteProfiles-CRIB domain profile.-PS50108, at 208,531 to 209,463 11153

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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203,844 - +0.4
204,222 + +0.9
204,264 + +1.9
204,519 - +1.4
204,522 - -0.2
204,561 + +0.5
205,247 - 11152 mRNA_2784 0.18 +1.5
205,302 + 11152 mRNA_2784 0.20 -0.1
205,381 + 11152 mRNA_2784 0.22 -2.6
205,713 + 11152 mRNA_2784 0.31 -1.0
205,717 - 11152 mRNA_2784 0.31 +1.0
205,721 + 11152 mRNA_2784 0.31 -1.5
205,884 + 11152 mRNA_2784 0.36 +0.3
205,976 - 11152 mRNA_2784 0.39 -0.5
206,154 + 11152 mRNA_2784 0.44 -1.0
206,179 - 11152 mRNA_2784 0.45 -1.4
206,187 - 11152 mRNA_2784 0.45 -0.1
206,595 + 11152 mRNA_2784 0.56 -3.4
207,151 + 11152 mRNA_2784 0.72 +0.4
207,613 - 11152 mRNA_2784 0.85 -0.2
207,771 - 11152 mRNA_2784 0.90 -1.8
207,773 - 11152 mRNA_2784 0.90 -2.0
207,780 + -1.1
207,884 - -1.6
208,021 - -1.6
208,066 + +0.8
208,508 - -0.3
208,602 - +0.5
208,656 - 11153 mRNA_2785 0.13 +0.6
208,662 + 11153 mRNA_2785 0.14 +1.4
208,691 - 11153 mRNA_2785 0.17 -0.2
208,790 + 11153 mRNA_2785 0.28 -0.4

Or see this region's nucleotide sequence